Population dynamics models

Urine production rate is critical in a model for catheter-associated urinary tract infection

F. Bull, S. Tavaddod, N. Bommer, M. Perry, C. A. Brackley and R. J. Allen

BioRxiv 10.1101/2022.10.31.514508 (2022)

 

Model for quorum-sensing mediated stochastic biofilm formation

P. Sinclair, C. A. Brackley, M. Carballo-Pacheco and R. J. Allen

Physical Review Letters (2022)

Reviewed in Nature Reviews Physics: "Fluctuating into a biofilm" by Zoe Budrikis (2022) 

 

Lineage dynamics in growing biofilms: spatial patterns of standing vs. de novo diversity 

E. Young and R. J. Allen

Frontiers in Microbiology 13 915095 (2022) 

 

Tracking the stochastic growth of bacterial populations in microfluidic droplets

Daniel Taylor, Nia Verdon, Peter Lomax, Rosalind J Allen and Simon Titmuss

Physical Biology 19, 026003 (2022)

 

A computational model for microbial colonisation of an antifouling surface

P. Sinclair, J. Longyear, K. Reynolds, A. A. Finnie, C. A. Brackley, M. Carballo-Pacheco and R. J. Allen

Frontiers in Microbiology 13 920014 (2022)

 

Growth-dependent drug susceptibility can prevent or enhance spatial expansion of a bacterial population

P. Sinclair, M. Carballo Pacheco* and R. J. Allen*

Physical Biology 16, 046001 (2019)

 

Resource spectrum engineering by specialist species can shift the specialist-generalist balance

C. G. Mills, R. J. Allen* and R. A. Blythe* 

Theoretical Ecology 1-15 (2019)

 

Bacterial growth: a statistical physicist's guide

R. J. Allen and B. Waclaw

Reports on Progress in Physics  82, 016601 (2019)

 

Resource spectrum engineering by specialist species can strongly disfavour generalists

C. G. Mills, R. J. Allen and R. A. Blythe (submitted)

 

Speed of invasion of an expanding population by a horizontally-transmitted trait

Genetics 196, 497-507 (2014) (* = equal contribution)

 

Parasites on parasites: coupled fluctuations in stacked contact processes

Europhys. Lett. 101, 50001 (2013)

 

Mutational pathway determines whether drug gradients accelerate evolution of drug-resistant cells

Phys. Rev. Lett. 109, 088101 (2012) (*=equal contribution)

Selected as editor's choice and featured in a viewpoint article "Bacteria Evolve to Go Against the Grain" by Oskar Hallatschek, Physics 5, 93 (2012)

 

Switching and growth for microbial populations in catastrophic responsive environments

Biophys. J. 98, 1099-1108 (2010)

 

Dynamical phase transition in a model for evolution with migration

Phys. Rev. Lett. 105, 268101 (2010)