Simulation methods


Trajectory reweighting for non-equilibrium steady states

Molecular Physics 116, 3103-3113 (2018)


Malliavin Weight Sampling: a Practical Guide

Entropy 16, 221-232 (2014).


Automatic, optimal interface placement in forward flux sampling simulations

J. Chem. Phys. 138, 164112 (2013).


Malliavin weight sampling for computing sensitivity coefficients in Brownian dynamics simulations

Phys. Rev. Lett. 109, 250601 (2012).


Steady-state parameter sensitivity in stochastic modeling via trajectory reweighting

J. Chem. Phys. 136, 104106 (2012).


Non-stationary forward flux sampling

J. Chem. Phys. 136, 174118 (2012).


Forward Flux Sampling for rare event simulations

Journal of Physics Condensed Matter 21, 463102 (2009).


Computing stationary distributions in equilibrium and non-equilibrium systems with Forward Flux Sampling

J. Chem. Phys. 127, 114109 (2007).

Virtual Journal of Biological Physics Research


Forward flux sampling-type schemes for simulating rare events: Efficiency analysis

J. Chem. Phys. 124, 194111 (2006).


Simulating rare events in equilibrium or nonequilibrium stochastic simulations

J. Chem. Phys. 124, 024102 (2006).

Virtual Journal of Biological Physics Research


Sampling rare switching events in biochemical networks

Phys. Rev. Lett. 94, 018104 (2005).

Virtual Journal of Biological Physics Research