LAMMPS Stuff
Below are some links for various projects involving LAMMPS.
A very simple lammps tutorial
This is a short tutorial for LAMMPS which goes through simple polymer simulations.
A twistable elastic polymer model
Source code and example input scripts for the twistable elastic polymer model detailed in our JCP paper
C. A. Brackley, A. N. Morozov and D. Marenduzzo "Models for twistable elastic polymers in Brownian dynamics, and their implementation for LAMMPS" J. Chem. Phys. 140 135103 (2014) jcp arXiv
A double stranded coarse grained DNA model
Example input scripts for the double stranded coarse grained DNA model developed by Yair Fosado, and detailed in our Soft Matter paper
Y. A. G. Fosado, D. Michieletto, J. Allan, C. A. Brackley, O. Henrich and D. Marenduzzo "A single nucleotide resolution model for large-scale simulations of double stranded DNA" Soft Matter 12 9458-9470 (2016) Soft Matter arXiv
A model for "polymer pusher" proteins.
Source code and example input scripts for a model for proteins which generate a force when bound to a polymer (using the twistable elastic polymer model above).
Miscellaneous Stuff
Details of various add-ons for LAMMPS.